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Environmental DNA for Detection of Endangered Grouper Species (Epinephelus spp.)

Servet Ahmet Doğdu, Cemal Turan*

DOI: 10.28978/nesciences.286311

Keywords

Environmental DNA, COI, Endangered Grouper Species, Epinephelus spp.

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References
  • Begon M, Townsend CR, Harper JL (2005). Ecology: from individuals to ecosystems. Hoboken, NJ, USA: Wiley-Blackwell. 752 p.
  • Brabon, H. A., Eisenhour, D. J., Washburn, B. A., Eisenhour, L. V., Stull, M. A., & Brammell, B. (2015). Detection of Percopsis omiscomaycus (trout-perch) using eDNA in eastern Kentucky streams.
  • Costanza R. (1999). The ecological, economic, and social importance of the oceans. Ecological Economics 31: 199–213
  • Davison, P. I., Créach, V., Liang, W. J., Andreou, D., Britton, J. R., & Copp, G. H. (2016). Laboratory and field validation of a simple method for detecting four species of non‐native freshwater fish using eDNA. Journal of Fish Biology,89(3), 1782-1793.
  • FAO (2010) The State of World Fisheries and Aquaculture 2010. Rome: FAO.197 p.
  • Ficetola, G. F., Miaud, C., Pompanon, F., & Taberlet, P. (2008). Species detection using environmental DNA from water samples. Biology letters, 4(4), 423-425
  • Goldberg, C. S., Pilliod, D. S., Arkle, R. S., & Waits, L. P. (2011). Molecular detection of vertebrates in stream water: a demonstration using Rocky Mountain tailed frogs and Idaho giant salamanders. PloS one, 6(7), e22746
  • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic acids symposium series (Vol. 41, pp. 95-98).
  • Jerde, C. L., Mahon, A. R., Chadderton, W. L., & Lodge, D. M. (2011). “Sight‐unseen” detection of rare aquatic species using environmental DNA. Conservation Letters, 4(2), 150-157
  • Keskin, E., Unal, E. M., & Atar, H. H. (2016). Detection of rare and invasive freshwater fish species using eDNA pyrosequencing: Lake Iznik ichthyofauna revised. Biochemical Systematics and Ecology67, 29-36.
  • Mächler, E., Deiner, K., Spahn, F., & Altermatt, F. (2015). Fishing in the water: effect of sampled water volume on environmental DNA-based detection of macroinvertebrates. Environmental science & technology50(1), 305-312.
  • Nielsen, C. (2012). Animal evolution: interrelationships of the living phyla. Oxford University Press on Demand, University Press. 464 p.
  • Port, J. A., O'Donnell, J. L., Romero‐Maraccini, O. C., Leary, P. R., Litvin, S. Y., Nickols, K. J., & Kelly, R. P. (2016). Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA. Molecular ecology25(2), 527-541. 
  • Rees, H. C., Maddison, B. C., Middleditch, D. J., Patmore, J. R., & Gough, K. C. (2014). REVIEW: The detection of aquatic animal species using environmental DNA–a review of eDNA as a survey tool in ecology. Journal of Applied Ecology,51(5), 1450-1459.
  • Robson, H. L., Noble, T. H., Saunders, R. J., Robson, S. K., Burrows, D. W., & Jerry, D. R. (2016). Fine‐tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems. Molecular ecology resources.
  • Sanger, F., Nicklen, S., & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences,74(12), 5463-5467.
  • Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic acids research22(22), 4673-4680.
  • Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M. (2012). Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol doi:10.1111/j.1365-294X.2011.05418.x
  • Valentini A, Pompanon F, Taberlet P. (2009). DNA barcoding for ecologists. Trends Ecol Evol 24: 110–117.
  • Yamamoto S, Minami K, Fukaya K, Takahashi K, Sawada H, et al. (2016) Correction: Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan. doi: info:doi/10.1371/journal.pone.0153291
  • Willerslev, E., Hansen, A. J., Binladen, J., Brand, T. B., Gilbert, M. T. P., Shapiro, B., & Cooper, A. (2003). Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science300(5620), 791-795.