Volume 1 - SUPPLEMENT of ABSTRACTS
Preliminary Results of Genetic Barcoding Serranidae Species from Turkish Coastline
- Mehmet Baki Yokes
AMBRD-Labs, Hanımefendi Sk., no:160/6, Şişli İstanbul
bakiyokes@gmail.com
- Deniz Kanca
Haliç Üniversitesi Moleküler Biyoloji ve Genetik Bölümü, Sütlüce, İstanbul
denizkanca@halic.edu.tr
- Serdar Erdogan
3GTS Laboratuvarlar Grubu, Evren Mah., Emrak Sk., no: 2, Güneşli, İstanbul
serdarerdogan@gtslab.com
Keywords: COI, Barcoding, Serranidae, Turkey
Abstract
In the framework of a barcoding project 275 Serranid specimens have been collected from
Turkish coastline between 2007-2016. Until now 66 of the specimens (Epinephelus
aeneus (n=10), Epinephelus caninus (n=2), Epinephelus costae (n=5), Epinephelus
marginatus (n=10), Hyporthodus haifensis (n=6), Mycteroperca rubra (n=3), Serranus
cabrilla (n=10), Serranus hepatus (n=10), Serranus scriba (n=10)) were investigated for
mitochondrial cytochrome oxidase subunit I (COI) gene. Total DNA was isolated from either
muscle or fin tissue. COI gene was partially amplified with universal primers and sequenced.
High genetic differences were observed between the species. Each species had a unique
barcode, enabling the species be easily identified from the COI barcode. Intra-species
variation was only found in Serranus hepatus. The results (642 bp) were compared with the
GeneBank entries. It was observed that the sequences were highly matched (99-100 %) the
data from other Mediterranean countries. Surprisingly, our data showed less similarity with
the sequences previously reported from Turkey. Although allelic variations have been
reported for Epinephelus aeneus (4 alleles), Epinephelus marginatus (5 alleles), Serranus
cabrilla (3 alleles) and Serranus scriba (3 alleles) from Turkey, we did not yet found any COI
sequence variations in these species. Moreover, the previous reports of Serranus
scriba sequences from Turkey by Keskin et al. (2013) did not closely matched our sequence
(625/642 and 624/642 bp match), whereas our sequence is 100% in accordance with the
entries from Italy, France and Turkey (Iskenderun Bay), suggesting that previous records of
Keskin et al. (2013) might belong to a different species.